HL_3JCJ_104

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

3JCJ|1|v|U|17|||A, 3JCJ|1|v|G|18, 3JCJ|1|v|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_104 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.221

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCJ|1|v|C|13
3JCJ|1|v|A|14
3JCJ|1|v|G|15
3JCJ|1|v|C|16
3JCJ|1|v|C|17
3JCJ|1|v|U|17|||A
3JCJ|1|v|G|18
3JCJ|1|v|G|19
3JCJ|1|v|H2U|20
3JCJ|1|v|A|21
3JCJ|1|v|G|22

Current chains

Chain v

tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA