HL_3JCJ_106
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GG(5MU)(PSU)CAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCJ_106 not in the Motif Atlas
- Homologous match to HL_4WQ1_225
- Geometric discrepancy: 0.4895
- The information below is about HL_4WQ1_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCJ|1|v|G|52
3JCJ|1|v|G|53
3JCJ|1|v|5MU|54
3JCJ|1|v|PSU|55
3JCJ|1|v|C|56
3JCJ|1|v|A|57
3JCJ|1|v|A|58
3JCJ|1|v|A|59
3JCJ|1|v|U|60
3JCJ|1|v|C|61
3JCJ|1|v|C|62
Current chains
- Chain v
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain a
- 50S ribosomal protein L33
Coloring options: