HL_3JCJ_111

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

3JCJ|1|A|U|958, 3JCJ|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_111 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2322

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3JCJ|1|A|U|955
3JCJ|1|A|G|956
3JCJ|1|A|C|957
3JCJ|1|A|U|958
3JCJ|1|A|A|959
3JCJ|1|A|A|960
3JCJ|1|A|C|961
3JCJ|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16