HL_3JCJ_112

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

3JCJ|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_112 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.218

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|C|1064
3JCJ|1|A|U|1065
3JCJ|1|A|U|1066
3JCJ|1|A|A|1067
3JCJ|1|A|G|1068
3JCJ|1|A|A|1069
3JCJ|1|A|A|1070
3JCJ|1|A|G|1071
3JCJ|1|A|C|1072
3JCJ|1|A|A|1073
3JCJ|1|A|G|1074

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L11

Chain L

50S ribosomal protein L16