HL_3JCJ_123

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

3JCJ|1|g|C|841, 3JCJ|1|g|U|842, 3JCJ|1|g|U|843, 3JCJ|1|g|G|844, 3JCJ|1|g|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_123 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.272

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

3JCJ|1|g|C|839
3JCJ|1|g|C|840
3JCJ|1|g|C|841
3JCJ|1|g|U|842
3JCJ|1|g|U|843
3JCJ|1|g|G|844
3JCJ|1|g|A|845
3JCJ|1|g|G|846
3JCJ|1|g|G|847

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 1

30S ribosomal protein S18

Chain j

30S ribosomal protein S2