HL_3JCJ_127

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

3JCJ|1|A|U|138, 3JCJ|1|A|U|139, 3JCJ|1|A|C|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_127 not in the Motif Atlas

Homologous match to HL_5J7L_137

Geometric discrepancy: 0.4753

The information below is about HL_5J7L_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32392.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3JCJ|1|A|U|137
3JCJ|1|A|U|138
3JCJ|1|A|U|139
3JCJ|1|A|C|140
3JCJ|1|A|G|141
3JCJ|1|A|A|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23