HL_3JCN_035

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

3JCN|1|A|U|1396, 3JCN|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1845

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3JCN|1|A|G|1389
3JCN|1|A|U|1390
3JCN|1|A|U|1391
3JCN|1|A|A|1392
3JCN|1|A|A|1393
3JCN|1|A|U|1394
3JCN|1|A|A|1395
3JCN|1|A|U|1396
3JCN|1|A|U|1397
3JCN|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23