RNA 3D Hub //

3JCN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JCN_0021/A/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_3JCN_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_3JCN_0061/A/194:201No text annotation
geometric
HL_7RQB_006
NA
HL_3JCN_0081/A/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_3JCN_0101/A/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_3JCN_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_3JCN_0121/A/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_3JCN_0131/A/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_3JCN_0141/A/462:467GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_3JCN_0151/A/487:493GNRA
homologous
HL_5J7L_148
NA
HL_3JCN_0171/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_3JCN_0181/A/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_3JCN_0191/A/629:634GNRA
homologous
HL_5J7L_152
NA
HL_3JCN_0221/A/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_3JCN_1081/A/779:785No text annotation
homologous
HL_5J7L_156
NA
HL_3JCN_0241/A/826:831No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_3JCN_0331/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_3JCN_0341/A/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_3JCN_0351/A/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_3JCN_0401/A/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_3JCN_0411/A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_3JCN_0491/A/1949:1957No text annotation
homologous
HL_4WF9_046
HL_61418.2
HL_3JCN_0501/A/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_3JCN_0531/A/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_3JCN_0541/A/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_3JCN_0581/A/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.2
HL_3JCN_0651/A/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_3JCN_0661/A/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_3JCN_0711/B/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_3JCN_0721/a/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_3JCN_0911/a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.2

Problematic loops

#loop idProblemSequence
HL_3JCN_001No text annotation
HL_3JCN_004No text annotation
HL_3JCN_005No text annotation
HL_3JCN_007No text annotation
HL_3JCN_009T-loop with 2 stacked bulged bases
HL_3JCN_107No text annotation
HL_3JCN_016No text annotation
HL_3JCN_020No text annotation
HL_3JCN_021GNRA wlth tandem sheared
HL_3JCN_023No text annotation
HL_3JCN_025No text annotation
HL_3JCN_026GNRA
HL_3JCN_027No text annotation
HL_3JCN_028No text annotation
HL_3JCN_029No text annotation
HL_3JCN_109No text annotation
HL_3JCN_030No text annotation
HL_3JCN_031GNRA
HL_3JCN_032T-loop with 2 stacked bulged bases
HL_3JCN_036Mini UNCG with extended bulge
HL_3JCN_037Pseudoknot geometry with 3' bulge
HL_3JCN_038UNCG
HL_3JCN_039Mini UNCG
HL_3JCN_042No text annotation
HL_3JCN_110No text annotation
HL_3JCN_043No text annotation
HL_3JCN_044No text annotation
HL_3JCN_045No text annotation
HL_3JCN_046GNRA related
HL_3JCN_047GNRA variation
HL_3JCN_048No text annotation
HL_3JCN_051No text annotation
HL_3JCN_052No text annotation
HL_3JCN_055No text annotation
HL_3JCN_056Pseudoknot geometry
HL_3JCN_057GNRA
HL_3JCN_059No text annotation
HL_3JCN_060No text annotation
HL_3JCN_061GNRA variation
HL_3JCN_062No text annotation
HL_3JCN_063GNRA
HL_3JCN_064GNRA
HL_3JCN_067UNCG variation
HL_3JCN_117No text annotation
HL_3JCN_068No text annotation
HL_3JCN_069GNRA
HL_3JCN_111No text annotation
HL_3JCN_070No text annotation
HL_3JCN_112No text annotation
HL_3JCN_118No text annotation
HL_3JCN_073No text annotation
HL_3JCN_074GNRA
HL_3JCN_075GNRA
HL_3JCN_113No text annotation
HL_3JCN_119No text annotation
HL_3JCN_076UNCG
HL_3JCN_077GNRA related
HL_3JCN_078GNRA
HL_3JCN_079No text annotation
HL_3JCN_080UNCG
HL_3JCN_081GNRA
HL_3JCN_082UNCG
HL_3JCN_083No text annotation
HL_3JCN_114GNRA wlth extra near cWW
HL_3JCN_084No text annotation
HL_3JCN_085GNRA-like with tWH
HL_3JCN_086No text annotation
HL_3JCN_087GNRA
HL_3JCN_088No text annotation
HL_3JCN_089No text annotation
HL_3JCN_090GNRA
HL_3JCN_092No text annotation
HL_3JCN_093GNRA
HL_3JCN_094No text annotation
HL_3JCN_095GNRA
HL_3JCN_096T-loop related
HL_3JCN_115No text annotation
HL_3JCN_097No text annotation
HL_3JCN_098GNRA
HL_3JCN_099GNRA
HL_3JCN_100T-loop with 3 stacked bulged bases
HL_3JCN_116No text annotation
HL_3JCN_101No text annotation
HL_3JCN_102UNCG
HL_3JCN_103GNRA
HL_3JCN_104No text annotation
HL_3JCN_105tRNA anticodon loop
HL_3JCN_106No text annotation
HL_3JCN_120T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JCN_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_3JCN_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_3JCN_0051/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_3JCN_0081/A/269:271,
1/A/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_3JCN_0101/A/293:295,
1/A/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_3JCN_0111/A/481:484,
1/A/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_3JCN_0121/A/536:539,
1/A/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_3JCN_0131/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_3JCN_0151/A/672:674,
1/A/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_3JCN_0171/A/697:698,
1/A/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_3JCN_0211/A/837:838,
1/A/940:942		Single stack bend
homologous
IL_5J7L_266
NA
IL_3JCN_0241/A/850:851,
1/A/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_3JCN_0251/A/856:862,
1/A/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_3JCN_0321/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_3JCN_0331/A/1004:1011,
1/A/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_3JCN_2001/A/1018:1024,
1/A/1140:1144		Kink-turn related
homologous
IL_5J7L_280
NA
IL_3JCN_2011/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_3JCN_0431/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_3JCN_0441/A/1208:1215,
1/A/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_3JCN_0451/A/1262:1269,
1/A/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_3JCN_2021/A/1310:1313,
1/A/1603:1604		Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_74641.2
IL_3JCN_0461/A/1319:1323,
1/A/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_3JCN_0471/A/1351:1355,
1/A/1376:1380		UAA/GAN
homologous
IL_7A0S_048
IL_89021.3
IL_3JCN_0521/A/1437:1440,
1/A/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_3JCN_0591/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_3JCN_0611/A/1666:1669,
1/A/1993:1994		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_3JCN_1811/A/1666:1674,
1/A/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_3JCN_0621/A/1669:1674,
1/A/1990:1993		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_3JCN_0671/A/1770:1771,
1/A/1980:1982		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_3JCN_0681/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_3JCN_1831/A/1851:1860,
1/A/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_3JCN_0721/A/1864:1867,
1/A/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_3JCN_0741/A/1934:1945,
1/A/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_3JCN_0871/A/2350:2353,
1/A/2364:2367		Double sheared
homologous
IL_5J7L_333
NA
IL_3JCN_0911/A/2459:2461,
1/A/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_3JCN_0981/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_3JCN_1001/A/2680:2684,
1/A/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_3JCN_1011/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_3JCN_1031/A/2737:2742,
1/A/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_3JCN_1051/A/2838:2839,
1/A/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_3JCN_1061/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_3JCN_1131/a/30:32,
1/a/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.2
IL_3JCN_1141/a/44:45,
1/a/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_3JCN_1241/a/147:153,
1/a/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_3JCN_1261/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_3JCN_1291/a/371:375,
1/a/389:390		C-loop
geometric
IL_5J7L_018
NA
IL_3JCN_1301/a/375:376,
1/a/387:389		Single bulged G
homologous
IL_5J7L_019
NA
IL_3JCN_1351/a/504:511,
1/a/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_3JCN_1361/a/515:521,
1/a/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_3JCN_1381/a/580:584,
1/a/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_3JCN_1411/a/605:612,
1/a/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_3JCN_1581/a/1061:1063,
1/a/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_3JCN_1621/a/1255:1258,
1/a/1277:1282		180 degree turn
homologous
IL_5J7L_055
NA
IL_3JCN_1641/a/1303:1308,
1/a/1329:1334		No text annotation
geometric
IL_5J7L_057
NA
IL_3JCN_1661/a/1401:1404,
1/a/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_3JCN_1711/a/1430:1435,
1/a/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA

Problematic loops

#loop idProblemSequence
IL_3JCN_174Minor groove platform with extra cWW
IL_3JCN_003Minor groove platform
IL_3JCN_004No text annotation
IL_3JCN_0068x7 Sarcin-Ricin; G-bulge
IL_3JCN_0077x6 Sarcin-Ricin; G-bulge
IL_3JCN_009No text annotation
IL_3JCN_014AAA cross-strand stack
IL_3JCN_016tHW-tHW cross-strand stack
IL_3JCN_018Single bulged G
IL_3JCN_019Triple sheared
IL_3JCN_020Major groove platform with extra cWW
IL_3JCN_02290 degree turn
IL_3JCN_175No text annotation
IL_3JCN_023Stack outside cWW
IL_3JCN_026Single bulged G
IL_3JCN_027C-loop with bulged stacked A's
IL_3JCN_028Isolated non-canonical cWW pair
IL_3JCN_176Tandem non-canonical cWW pairs
IL_3JCN_029Double sheared with non-canonical cWW
IL_3JCN_177No text annotation
IL_3JCN_030Isolated non-canonical cWW pair
IL_3JCN_031Single bulged C
IL_3JCN_034Single bulged U
IL_3JCN_035No text annotation
IL_3JCN_036No text annotation
IL_3JCN_037Isolated non-canonical cWW pair
IL_3JCN_038Tandem non-canonical cWW pairs
IL_3JCN_178Kink-turn
IL_3JCN_039No text annotation
IL_3JCN_179No text annotation
IL_3JCN_040No text annotation
IL_3JCN_041Multiple bulged bases
IL_3JCN_042Tandem non-canonical cWW pairs
IL_3JCN_048tSH-tHW-tHS
IL_3JCN_049No text annotation
IL_3JCN_050UAA/GAN
IL_3JCN_051Tandem non-canonical cWW pairs
IL_3JCN_053Single bulged U
IL_3JCN_054No text annotation
IL_3JCN_055No text annotation
IL_3JCN_180No text annotation
IL_3JCN_203tSH-tHW-tHS
IL_3JCN_056180 degree turn
IL_3JCN_057Single bulged A
IL_3JCN_058UAA/GAN variation
IL_3JCN_060Isolated tWW turn
IL_3JCN_063tSH-tSH-tHH-tHS
IL_3JCN_0646x5 Sarcin-Ricin; G-bulge
IL_3JCN_065Triple sheared
IL_3JCN_066Single bulged C
IL_3JCN_069Minor groove platform, major groove intercalation
IL_3JCN_070Major groove intercalation
IL_3JCN_182No text annotation
IL_3JCN_071Major groove minor groove platform; mini C-loop
IL_3JCN_073Bulged stacked bases
IL_3JCN_075Major groove platform
IL_3JCN_076No text annotation
IL_3JCN_077Single bulged U
IL_3JCN_184No text annotation
IL_3JCN_078Minor groove platform
IL_3JCN_079Isolated tHS basepair with bulges
IL_3JCN_080Isolated non-canonical cWW pair
IL_3JCN_185Isolated non-canonical cWW pair
IL_3JCN_081Tandem non-canonical cWW pairs
IL_3JCN_082No text annotation
IL_3JCN_186Tandem non-canonical cWW pairs
IL_3JCN_204No text annotation
IL_3JCN_083No text annotation
IL_3JCN_084Kink-turn related
IL_3JCN_205Kink-turn
IL_3JCN_085No text annotation
IL_3JCN_187No text annotation
IL_3JCN_086Single bulged U
IL_3JCN_088No text annotation
IL_3JCN_089Major groove platform
IL_3JCN_090Major groove platform
IL_3JCN_092Double sheared with non-canonical cWW
IL_3JCN_093Major groove platform
IL_3JCN_094Isolated non-canonical cWW with bulges
IL_3JCN_095No text annotation
IL_3JCN_096Major groove platform with intercalation
IL_3JCN_097Single bulged A
IL_3JCN_099Sarcin-Ricin target in LSU H95; G-bulge
IL_3JCN_102Multiple bulged bases
IL_3JCN_206Single bulged A
IL_3JCN_104No text annotation
IL_3JCN_107No text annotation
IL_3JCN_188tHS double platform
IL_3JCN_108Major groove intercalation
IL_3JCN_109No text annotation
IL_3JCN_110Major groove minor groove platform; mini C-loop
IL_3JCN_111No text annotation
IL_3JCN_189Symmetric double minor groove platform
IL_3JCN_112Bacterial 5S Loop E
IL_3JCN_115No text annotation
IL_3JCN_116Minor groove platform
IL_3JCN_117Isolated non-canonical cWW pair
IL_3JCN_190No text annotation
IL_3JCN_118Minor groove platform with extra cWW
IL_3JCN_191No text annotation
IL_3JCN_119Minor groove platform
IL_3JCN_120Major groove intercalation
IL_3JCN_192Tandem non-canonical cWW pairs
IL_3JCN_121Isolated non-canonical cWW pair
IL_3JCN_122Minor groove platform related
IL_3JCN_123Isolated cWH basepair
IL_3JCN_125No text annotation
IL_3JCN_127No text annotation
IL_3JCN_128C-loop
IL_3JCN_131No text annotation
IL_3JCN_132No text annotation
IL_3JCN_133tSH-tHW-tWW
IL_3JCN_134No text annotation
IL_3JCN_137No text annotation
IL_3JCN_139Major groove platform
IL_3JCN_140Major groove minor groove platform; mini C-loop
IL_3JCN_142Single stack bend
IL_3JCN_143Tandem non-canonical cWW pairs
IL_3JCN_207Triple non-canonical cWW pairs
IL_3JCN_144Kink-turn
IL_3JCN_145Left turn
IL_3JCN_146tSH-tHW-tHS
IL_3JCN_1478x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3JCN_148Single bulged A
IL_3JCN_193Isolated non-canonical cWW with bulges
IL_3JCN_149Single bulged G
IL_3JCN_194Isolated non-canonical cWW pair
IL_3JCN_150Minor groove platform
IL_3JCN_195Isolated non-canonical cWW pair
IL_3JCN_151No text annotation
IL_3JCN_152Minor groove platform
IL_3JCN_196No text annotation
IL_3JCN_153Single stack bend
IL_3JCN_154Single bulged U
IL_3JCN_155Isolated cWS basepair
IL_3JCN_156Minor groove platform
IL_3JCN_157Single bulged A
IL_3JCN_159No text annotation
IL_3JCN_197No text annotation
IL_3JCN_198No text annotation
IL_3JCN_160Minor groove platform
IL_3JCN_161No text annotation
IL_3JCN_163Double sheared with non-canonical cWW
IL_3JCN_199No text annotation
IL_3JCN_165No text annotation
IL_3JCN_167Isolated non-canonical cWW pair
IL_3JCN_168Isolated non-canonical cWW pair
IL_3JCN_169Isolated non-canonical cWW pair
IL_3JCN_170Double sheared
IL_3JCN_172Single bulged A
IL_3JCN_173No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JCN_0261/A/30:31,
1/A/474:484,
1/A/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_3JCN_0271/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_3JCN_0281/A/297:301,
1/A/316:325,
1/A/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_3JCN_0291/A/683:689,
1/A/773:777,
1/A/787:794		No text annotation
J3_3JCN_0041/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_3JCN_0061/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_3JCN_0071/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_3JCN_0321/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_3JCN_0331/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_3JCN_0101/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_3JCN_0121/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_3JCN_0411/a/672:673,
1/a/717:725,
1/a/732:734		No text annotation
homologous
J3_5J7L_003
NA
J3_3JCN_0181/a/943:946,
1/a/1235:1237,
1/a/1337:1340		No text annotation
homologous
J3_5J7L_005
NA
J3_3JCN_0221/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193		No text annotation
geometric
J3_5J7L_008
NA
J4_3JCN_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_3JCN_0031/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_3JCN_0041/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_3JCN_0151/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_3JCN_0071/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_3JCN_0171/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972		No text annotation
homologous
J4_5J7L_026
NA
J4_3JCN_0091/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_3JCN_0101/A/2643:2646,
1/A/2674:2676,
1/A/2731:2735,
1/A/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_3JCN_0131/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_3JCN_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_3JCN_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_3JCN_0041/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_3JCN_0101/A/2057:2064,
1/A/2446:2454,
1/A/2498:2506,
1/A/2583:2588,
1/A/2606:2611		No text annotation
J5_3JCN_0111/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_3JCN_0071/a/36:39,
1/a/403:406,
1/a/436:440,
1/a/497:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_3JCN_0081/a/36:39,
1/a/403:406,
1/a/436:442,
1/a/492:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_3JCN_0091/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354		No text annotation
homologous
J5_5J7L_003
NA
J6_3JCN_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433		No text annotation
J7_3JCN_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_3JCN_0021/A/817:822,
1/A/835:837,
1/A/942:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_3JCN_001No text annotation
J3_3JCN_002No text annotation
J3_3JCN_039No text annotation
J3_3JCN_003No text annotation
J3_3JCN_005No text annotation
J3_3JCN_030No text annotation
J3_3JCN_040No text annotation
J3_3JCN_031No text annotation
J3_3JCN_008Kink-turn 3-way junction
J3_3JCN_009No text annotation
J3_3JCN_011No text annotation
J3_3JCN_013No text annotation
J3_3JCN_014No text annotation
J3_3JCN_034No text annotation
J3_3JCN_015No text annotation
J3_3JCN_035No text annotation
J3_3JCN_016No text annotation
J3_3JCN_017No text annotation
J3_3JCN_042No text annotation
J3_3JCN_019No text annotation
J3_3JCN_020No text annotation
J3_3JCN_036No text annotation
J3_3JCN_021No text annotation
J3_3JCN_037No text annotation
J3_3JCN_038No text annotation
J3_3JCN_023No text annotation
J3_3JCN_024No text annotation
J3_3JCN_025No text annotation
J4_3JCN_001No text annotation
J4_3JCN_005No text annotation
J4_3JCN_016No text annotation
J4_3JCN_006No text annotation
J4_3JCN_008No text annotation
J4_3JCN_011No text annotation
J4_3JCN_012No text annotation
J4_3JCN_014tRNA junction
J5_3JCN_002No text annotation
J5_3JCN_005No text annotation
J5_3JCN_006No text annotation

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