HL_3JCN_114

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

3JCN|1|a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCN_114 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2475

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3JCN|1|a|G|462
3JCN|1|a|U|463
3JCN|1|a|U|464
3JCN|1|a|A|465
3JCN|1|a|A|466
3JCN|1|a|U|467
3JCN|1|a|A|468
3JCN|1|a|C|469
3JCN|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains