HL_3JCN_120
3D structure
- PDB id
- 3JCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCN_120 not in the Motif Atlas
- Homologous match to HL_1FIR_003
- Geometric discrepancy: 0.5286
- The information below is about HL_1FIR_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
3JCN|1|v|G|53
3JCN|1|v|5MU|54
3JCN|1|v|PSU|55
3JCN|1|v|C|56
3JCN|1|v|A|57
3JCN|1|v|A|58
3JCN|1|v|A|59
3JCN|1|v|U|60
3JCN|1|v|C|61
Current chains
- Chain v
- tRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
Coloring options: