HL_3JCS_004
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUUACAAGG
- Length
- 10 nucleotides
- Bulged bases
- 3JCS|1|1|U|131, 3JCS|1|1|A|132, 3JCS|1|1|A|134, 3JCS|1|1|A|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_004 not in the Motif Atlas
- Geometric match to HL_5XUZ_001
- Geometric discrepancy: 0.2738
- The information below is about HL_5XUZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|U|128
3JCS|1|1|C|129
3JCS|1|1|U|130
3JCS|1|1|U|131
3JCS|1|1|A|132
3JCS|1|1|C|133
3JCS|1|1|A|134
3JCS|1|1|A|135
3JCS|1|1|G|136
3JCS|1|1|G|137
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain M
- ribosomal protein L15e
- Chain a
- ribosomal protein L29
Coloring options: