3JCS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JCS_073 | 1/1/36:43 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_3JCS_002 | 1/1/67:72 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_3JCS_003 | 1/1/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_3JCS_004 | 1/1/128:137 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_3JCS_005 | 1/1/211:222 | No text annotation | ||
| HL_3JCS_006 | 1/1/253:261 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_3JCS_007 | 1/1/315:324 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_3JCS_008 | 1/1/341:350 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_3JCS_009 | 1/1/397:402 | GNRA | homologous HL_5TBW_010 NA | |
| HL_3JCS_010 | 1/1/423:428 | GNRA | homologous HL_5TBW_011 NA | |
| HL_3JCS_074 | 1/1/672:681 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_3JCS_014 | 1/1/745:750 | GNRA | homologous HL_5TBW_016 NA | |
| HL_3JCS_015 | 1/1/781:794 | No text annotation | ||
| HL_3JCS_016 | 1/1/814:826 | No text annotation | ||
| HL_3JCS_075 | 1/1/927:936 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_3JCS_019 | 1/1/961:969 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_3JCS_020 | 1/1/1009:1014 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_3JCS_023 | 1/1/1183:1189 | GNRA | homologous HL_8C3A_025 NA | |
| HL_3JCS_024 | 1/1/1205:1212 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_3JCS_027 | 1/1/1494:1499 | GNRA | homologous HL_8C3A_030 NA | |
| HL_3JCS_029 | 1/1/1613:1619 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_3JCS_030 | 1/1/1651:1658 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_3JCS_033 | 1/2/27:34 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_3JCS_034 | 1/2/45:51 | GNRA | homologous HL_8C3A_042 NA | |
| HL_3JCS_035 | 1/2/107:112 | UNCG | homologous HL_8C3A_043 NA | |
| HL_3JCS_037 | 1/2/381:391 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_3JCS_038 | 1/2/410:416 | GNRA | homologous HL_8C3A_047 NA | |
| HL_3JCS_039 | 1/2/465:472 | No text annotation | geometric HL_4WF9_041 NA | |
| HL_3JCS_041 | 1/2/538:546 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_3JCS_042 | 1/2/615:624 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_3JCS_043 | 1/2/695:743 | No text annotation | ||
| HL_3JCS_046 | 1/2/988:998 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_3JCS_048 | 1/2/1061:1073 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_3JCS_050 | 1/2/1121:1128 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_3JCS_076 | 1/2/1153:1161 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_3JCS_052 | 1/2/1173:1178 | GNRA | homologous HL_8C3A_060 NA | |
| HL_3JCS_053 | 1/2/1215:1223 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_3JCS_055 | 1/2/1334:1345 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_3JCS_056 | 1/2/1359:1365 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_3JCS_057 | 1/2/1402:1407 | GNRA | homologous HL_8C3A_065 NA | |
| HL_3JCS_058 | 1/3/5:10 | GNRA | geometric HL_5TBW_036 NA | |
| HL_3JCS_060 | 1/3/112:120 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.1 | |
| HL_3JCS_062 | 1/4/96:101 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_3JCS_064 | 1/5/12:20 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_3JCS_066 | 1/6/10:33 | Mini UNCG | geometric HL_4V9F_041 HL_48778.2 | |
| HL_3JCS_067 | 1/7/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_3JCS_069 | 1/7/107:113 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_3JCS_071 | 1/8/33:48 | No text annotation | ||
| HL_3JCS_072 | 1/8/88:93 | UNCG | geometric HL_1NBS_006 HL_34617.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JCS_001 | No text annotation | ||
| HL_3JCS_011 | No text annotation | ||
| HL_3JCS_012 | No text annotation | ||
| HL_3JCS_013 | Mini UNCG | ||
| HL_3JCS_017 | No text annotation | ||
| HL_3JCS_018 | No text annotation | ||
| HL_3JCS_021 | No text annotation | ||
| HL_3JCS_022 | No text annotation | ||
| HL_3JCS_025 | No text annotation | ||
| HL_3JCS_026 | No text annotation | ||
| HL_3JCS_028 | No text annotation | ||
| HL_3JCS_031 | No text annotation | ||
| HL_3JCS_032 | No text annotation | ||
| HL_3JCS_036 | No text annotation | ||
| HL_3JCS_040 | No text annotation | ||
| HL_3JCS_044 | No text annotation | ||
| HL_3JCS_045 | No text annotation | ||
| HL_3JCS_047 | No text annotation | ||
| HL_3JCS_049 | No text annotation | ||
| HL_3JCS_051 | No text annotation | ||
| HL_3JCS_054 | No text annotation | ||
| HL_3JCS_059 | No text annotation | ||
| HL_3JCS_061 | No text annotation | ||
| HL_3JCS_063 | No text annotation | ||
| HL_3JCS_065 | No text annotation | ||
| HL_3JCS_068 | No text annotation | ||
| HL_3JCS_070 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JCS_001 | 1/1/6:7, 1/7/163:165 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_3JCS_157 | 1/1/11:12, 1/7/156:159 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_3JCS_004 | 1/1/25:26, 1/1/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_3JCS_129 | 1/1/29:36, 1/1/43:51 | tSH-tHW-tHH-tHS | homologous IL_8P9A_234 IL_84694.2 | |
| IL_3JCS_005 | 1/1/80:88, 1/1/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_3JCS_006 | 1/1/119:122, 1/1/148:149 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_3JCS_130 | 1/1/119:123, 1/1/143:149 | Kink-turn with embedded cWW pair | geometric IL_4V9F_108 IL_33886.1 | |
| IL_3JCS_007 | 1/1/122:123, 1/1/143:148 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_3JCS_008 | 1/1/124:125, 1/1/140:142 | Stack outside cWW | geometric IL_6JQ6_004 IL_66635.5 | |
| IL_3JCS_009 | 1/1/156:160, 1/1/295:298 | No text annotation | ||
| IL_3JCS_131 | 1/1/156:161, 1/1/294:298 | No text annotation | ||
| IL_3JCS_158 | 1/1/161:163, 1/1/292:294 | No text annotation | geometric IL_5E81_401 IL_42997.3 | |
| IL_3JCS_011 | 1/1/164:172, 1/1/285:291 | No text annotation | ||
| IL_3JCS_012 | 1/1/176:178, 1/1/277:281 | No text annotation | ||
| IL_3JCS_159 | 1/1/179:182, 1/1/271:276 | No text annotation | ||
| IL_3JCS_160 | 1/1/193:211, 1/1/222:239 | No text annotation | ||
| IL_3JCS_014 | 1/1/377:379, 1/7/24:25 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_3JCS_015 | 1/1/408:410, 1/7/19:20 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_3JCS_016 | 1/1/417:420, 1/1/431:444 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_3JCS_017 | 1/1/445:450, 1/7/13:18 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_3JCS_019 | 1/1/468:471, 1/1/662:665 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_3JCS_020 | 1/1/476:478, 1/1/656:657 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_3JCS_021 | 1/1/495:497, 1/1/557:559 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_3JCS_161 | 1/1/509:513, 1/1/538:545 | No text annotation | ||
| IL_3JCS_024 | 1/1/701:703, 1/1/842:844 | No text annotation | geometric IL_3LA5_001 NA | |
| IL_3JCS_025 | 1/1/717:719, 1/1/732:733 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_3JCS_026 | 1/1/773:781, 1/1/794:803 | No text annotation | ||
| IL_3JCS_027 | 1/1/809:810, 1/1/830:832 | Single bulged A | homologous IL_8P9A_252 IL_31462.7 | |
| IL_3JCS_135 | 1/1/854:856, 1/1/989:991 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_3JCS_136 | 1/1/856:860, 1/1/982:989 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_3JCS_031 | 1/1/883:885, 1/1/910:913 | Self complementary | geometric IL_5E81_371 NA | |
| IL_3JCS_032 | 1/1/885:889, 1/1/906:910 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_3JCS_033 | 1/1/891:893, 1/1/902:904 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_3JCS_034 | 1/1/920:923, 1/1/939:941 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_3JCS_035 | 1/1/924:926, 1/1/937:938 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_3JCS_036 | 1/1/958:960, 1/1/970:974 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_3JCS_037 | 1/1/1005:1007, 1/1/1016:1018 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_3JCS_038 | 1/1/1020:1021, 1/1/1168:1170 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_3JCS_039 | 1/1/1027:1033, 1/1/1158:1162 | No text annotation | ||
| IL_3JCS_040 | 1/1/1034:1036, 1/1/1156:1157 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_3JCS_041 | 1/1/1043:1049, 1/1/1101:1108 | No text annotation | ||
| IL_3JCS_043 | 1/1/1057:1062, 1/1/1090:1095 | No text annotation | ||
| IL_3JCS_137 | 1/1/1124:1129, 1/1/1137:1141 | No text annotation | ||
| IL_3JCS_045 | 1/1/1126:1129, 1/1/1137:1139 | No text annotation | ||
| IL_3JCS_046 | 1/1/1177:1179, 1/1/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_3JCS_047 | 1/1/1224:1229, 1/1/1397:1402 | No text annotation | ||
| IL_3JCS_048 | 1/1/1230:1237, 1/1/1387:1396 | No text annotation | ||
| IL_3JCS_049 | 1/1/1237:1240, 1/1/1386:1387 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_3JCS_138 | 1/1/1237:1242, 1/1/1385:1387 | Isolated non-canonical cWW pair | geometric IL_4JGN_004 NA | |
| IL_3JCS_050 | 1/1/1240:1242, 1/1/1385:1386 | No text annotation | ||
| IL_3JCS_139 | 1/1/1255:1267, 1/1/1361:1376 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_3JCS_162 | 1/1/1268:1274, 1/1/1355:1360 | No text annotation | ||
| IL_3JCS_054 | 1/1/1412:1414, 1/1/1452:1453 | No text annotation | ||
| IL_3JCS_055 | 1/1/1468:1470, 1/1/1520:1523 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_3JCS_056 | 1/1/1477:1479, 1/1/1511:1513 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_3JCS_057 | 1/1/1479:1486, 1/1/1507:1511 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_3JCS_058 | 1/1/1486:1487, 1/1/1505:1507 | No text annotation | ||
| IL_3JCS_059 | 1/1/1489:1492, 1/1/1501:1503 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_3JCS_141 | 1/1/1536:1542, 1/2/600:605 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_3JCS_061 | 1/1/1607:1612, 1/1/1620:1623 | No text annotation | homologous IL_8C3A_066 NA | |
| IL_3JCS_062 | 1/1/1640:1644, 1/1/1737:1742 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_3JCS_063 | 1/1/1645:1647, 1/1/1734:1736 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_57744.1 | |
| IL_3JCS_064 | 1/1/1681:1683, 1/1/1720:1721 | No text annotation | ||
| IL_3JCS_065 | 1/1/1749:1750, 1/1/1762:1767 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_3JCS_066 | 1/1/1776:1780, 1/2/4:8 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
| IL_3JCS_142 | 1/2/66:71, 1/2/593:595 | No text annotation | ||
| IL_3JCS_069 | 1/2/74:76, 1/2/589:590 | No text annotation | ||
| IL_3JCS_070 | 1/2/79:81, 1/2/584:586 | Isolated tWW turn | geometric IL_4WF9_063 IL_67095.2 | |
| IL_3JCS_143 | 1/2/82:85, 1/2/582:583 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_3JCS_144 | 1/2/82:90, 1/2/579:583 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_3JCS_072 | 1/2/85:90, 1/2/579:582 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_3JCS_073 | 1/2/102:107, 1/2/112:118 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_3JCS_074 | 1/2/124:126, 1/2/354:356 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_3JCS_145 | 1/2/374:375, 1/2/569:571 | Single bulged A | homologous IL_8P9A_310 IL_31462.7 | |
| IL_3JCS_077 | 1/2/402:407, 1/2/419:426 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_3JCS_078 | 1/2/442:445, 1/2/491:492 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_3JCS_079 | 1/2/446:447, 1/2/487:490 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_3JCS_080 | 1/2/450:456, 1/2/481:484 | No text annotation | ||
| IL_3JCS_081 | 1/2/457:462, 1/2/475:480 | No text annotation | ||
| IL_3JCS_082 | 1/2/522:523, 1/2/553:556 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_3JCS_147 | 1/2/523:534, 1/2/550:553 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_3JCS_084 | 1/2/637:640, 1/2/1425:1427 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_3JCS_086 | 1/2/642:644, 1/2/1420:1423 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_3JCS_148 | 1/2/655:657, 1/2/1250:1251 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_3JCS_149 | 1/2/658:659, 1/2/1246:1249 | Minor groove platform | homologous IL_8P9A_322 IL_51454.3 | |
| IL_3JCS_090 | 1/2/669:671, 1/2/1032:1035 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_3JCS_150 | 1/2/683:685, 1/2/754:756 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 IL_28037.2 | |
| IL_3JCS_093 | 1/2/692:693, 1/2/744:746 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_3JCS_094 | 1/2/693:695, 1/2/743:744 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3JCS_095 | 1/2/766:772, 1/2/1010:1014 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_3JCS_096 | 1/2/781:787, 1/2/806:811 | No text annotation | ||
| IL_3JCS_151 | 1/2/781:788, 1/2/805:811 | No text annotation | ||
| IL_3JCS_097 | 1/2/1094:1096, 1/2/1114:1118 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_3JCS_098 | 1/2/1144:1148, 1/2/1166:1169 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_3JCS_101 | 1/2/1262:1263, 1/2/1304:1306 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_3JCS_102 | 1/2/1263:1265, 1/2/1302:1304 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_3JCS_103 | 1/2/1315:1316, 1/2/1388:1390 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_3JCS_152 | 1/2/1318:1320, 1/2/1382:1386 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_3JCS_105 | 1/2/1320:1321, 1/2/1379:1382 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_3JCS_106 | 1/2/1330:1331, 1/2/1348:1351 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_3JCS_107 | 1/2/1357:1359, 1/2/1365:1367 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_3JCS_109 | 1/2/1399:1400, 1/2/1409:1411 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_3JCS_163 | 1/3/27:33, 1/3/192:204 | No text annotation | ||
| IL_3JCS_110 | 1/3/37:40, 1/3/180:183 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_3JCS_111 | 1/3/40:45, 1/3/175:180 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_3JCS_164 | 1/3/67:71, 1/3/144:149 | No text annotation | geometric IL_8CRE_076 IL_00981.1 | |
| IL_3JCS_112 | 1/3/72:74, 1/3/141:143 | Isolated non-canonical cWW pair | geometric IL_3GM7_003 IL_87907.2 | |
| IL_3JCS_115 | 1/4/30:31, 1/4/173:175 | Single bulged A | geometric IL_2QUX_002 IL_31462.7 | |
| IL_3JCS_116 | 1/4/31:35, 1/4/167:173 | No text annotation | ||
| IL_3JCS_117 | 1/4/75:79, 1/4/119:122 | C-loop | geometric IL_7RQB_104 NA | |
| IL_3JCS_118 | 1/4/79:81, 1/4/117:119 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_3JCS_119 | 1/4/82:87, 1/4/112:116 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_3JCS_120 | 1/4/91:92, 1/4/105:108 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_3JCS_165 | 1/4/131:136, 1/4/154:159 | No text annotation | ||
| IL_3JCS_166 | 1/5/34:37, 1/5/109:116 | No text annotation | ||
| IL_3JCS_123 | 1/5/38:44, 1/5/103:108 | No text annotation | ||
| IL_3JCS_154 | 1/5/39:46, 1/5/101:107 | No text annotation | ||
| IL_3JCS_124 | 1/5/44:46, 1/5/101:103 | Isolated non-canonical cWW pair | geometric IL_5MWI_001 IL_28037.2 | |
| IL_3JCS_125 | 1/6/8:10, 1/6/33:35 | No text annotation | geometric IL_3LA5_001 NA | |
| IL_3JCS_155 | 1/7/121:123, 1/7/138:142 | No text annotation | ||
| IL_3JCS_126 | 1/8/9:11, 1/8/112:114 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_3JCS_156 | 1/8/21:32, 1/8/49:61 | No text annotation | ||
| IL_3JCS_127 | 1/8/73:80, 1/8/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_3JCS_128 | 1/8/84:87, 1/8/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JCS_002 | Isolated non-canonical cWW pair | ||
| IL_3JCS_003 | No text annotation | ||
| IL_3JCS_010 | Tandem non-canonical cWW pairs | ||
| IL_3JCS_132 | No text annotation | ||
| IL_3JCS_013 | No text annotation | ||
| IL_3JCS_018 | Isolated non-canonical cWW pair | ||
| IL_3JCS_133 | No text annotation | ||
| IL_3JCS_022 | Isolated non-canonical cWW pair | ||
| IL_3JCS_023 | No text annotation | ||
| IL_3JCS_134 | No text annotation | ||
| IL_3JCS_028 | Isolated non-canonical cWW pair | ||
| IL_3JCS_029 | No text annotation | ||
| IL_3JCS_030 | Isolated non-canonical cWW pair | ||
| IL_3JCS_042 | No text annotation | ||
| IL_3JCS_044 | Isolated non-canonical cWW pair | ||
| IL_3JCS_051 | No text annotation | ||
| IL_3JCS_052 | No text annotation | ||
| IL_3JCS_140 | No text annotation | ||
| IL_3JCS_053 | No text annotation | ||
| IL_3JCS_060 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_3JCS_067 | No text annotation | ||
| IL_3JCS_068 | Isolated non-canonical cWW pair | ||
| IL_3JCS_071 | Major groove platform with extra pair | ||
| IL_3JCS_075 | No text annotation | ||
| IL_3JCS_076 | Tandem non-canonical cWW pairs | ||
| IL_3JCS_146 | Isolated non-canonical cWW contact | ||
| IL_3JCS_083 | No text annotation | ||
| IL_3JCS_085 | Isolated non-canonical cWW pair | ||
| IL_3JCS_087 | No text annotation | ||
| IL_3JCS_088 | No text annotation | ||
| IL_3JCS_089 | Stack and bulge | ||
| IL_3JCS_091 | Tandem non-canonical cWW pairs | ||
| IL_3JCS_092 | No text annotation | ||
| IL_3JCS_099 | Isolated non-canonical cWW pair | ||
| IL_3JCS_100 | No text annotation | ||
| IL_3JCS_104 | No text annotation | ||
| IL_3JCS_108 | Tandem non-canonical cWW pairs | ||
| IL_3JCS_113 | No text annotation | ||
| IL_3JCS_114 | No text annotation | ||
| IL_3JCS_121 | No text annotation | ||
| IL_3JCS_122 | No text annotation | ||
| IL_3JCS_153 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JCS_001 | 1/1/113:116, 1/1/152:156, 1/1/298:304 | No text annotation | ||
| J3_3JCS_019 | 1/1/185:193, 1/1/239:252, 1/1/262:268 | No text annotation | ||
| J3_3JCS_014 | 1/1/380:396, 1/1/403:410, 1/7/19:23 | No text annotation | ||
| J3_3JCS_002 | 1/1/410:417, 1/1/444:445, 1/7/18:19 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_3JCS_015 | 1/1/410:420, 1/1/431:445, 1/7/18:19 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_3JCS_003 | 1/1/865:871, 1/1/956:958, 1/1/974:977 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_3JCS_004 | 1/1/879:882, 1/1/914:918, 1/1/943:948 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_3JCS_005 | 1/1/1586:1592, 1/2/40:42, 1/2/54:57 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_3JCS_006 | 1/1/1595:1598, 1/2/20:26, 1/2/35:37 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_3JCS_016 | 1/1/1633:1640, 1/1/1742:1748, 1/1/1768:1770 | No text annotation | ||
| J3_3JCS_017 | 1/1/1647:1649, 1/1/1660:1681, 1/1/1721:1734 | No text annotation | ||
| J3_3JCS_007 | 1/2/677:681, 1/2/758:762, 1/2/1018:1026 | No text annotation | ||
| J3_3JCS_018 | 1/2/1079:1081, 1/2/1183:1193, 1/2/1232:1237 | No text annotation | ||
| J3_3JCS_008 | 1/2/1092:1094, 1/2/1118:1120, 1/2/1129:1134 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_3JCS_009 | 1/2/1325:1328, 1/2/1353:1355, 1/2/1369:1375 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_3JCS_011 | 1/7/44:45, 1/7/58:64, 1/7/95:99 | No text annotation | homologous J3_8P4V_024 NA | |
| J3_3JCS_012 | 1/8/11:17, 1/8/66:68, 1/8/111:112 | No text annotation | ||
| J4_3JCS_001 | 1/1/112:113, 1/1/304:309, 1/1/330:337, 1/1/354:357 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_3JCS_008 | 1/1/1543:1549, 1/1/1582:1583, 1/2/60:63, 1/2/598:599 | No text annotation | ||
| J4_3JCS_003 | 1/1/1599:1603, 1/1/1627:1632, 1/1/1771:1773, 1/2/11:19 | No text annotation | ||
| J4_3JCS_004 | 1/2/90:98, 1/2/122:123, 1/2/357:368, 1/2/577:579 | No text annotation | ||
| J4_3JCS_005 | 1/2/376:380, 1/2/392:396, 1/2/432:436, 1/2/563:568 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_3JCS_006 | 1/2/1082:1086, 1/2/1140:1148, 1/2/1166:1171, 1/2/1180:1182 | No text annotation | ||
| J4_3JCS_007 | 1/4/37:40, 1/4/70:71, 1/4/126:129, 1/4/161:165 | No text annotation | ||
| J5_3JCS_001 | 1/1/18:20, 1/7/35:42, 1/7/101:106, 1/7/114:115, 1/7/148:150 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_3JCS_002 | 1/1/690:695, 1/1/850:853, 1/1/992:996, 1/1/1465:1468, 1/1/1523:1529 | No text annotation | ||
| J5_3JCS_003 | 1/2/645:652, 1/2/1254:1262, 1/2/1306:1315, 1/2/1390:1396, 1/2/1414:1419 | No text annotation | ||
| J5_3JCS_004 | 1/2/662:665, 1/2/1039:1042, 1/2/1055:1056, 1/2/1078:1079, 1/2/1237:1243 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_3JCS_001 | 1/2/662:665, 1/2/1039:1042, 1/2/1055:1056, 1/2/1078:1081, 1/2/1183:1193, 1/2/1232:1243 | No text annotation | ||
| J7_3JCS_001 | 1/1/1000:1005, 1/1/1018:1019, 1/1/1171:1174, 1/1/1198:1203, 1/1/1214:1218, 1/1/1408:1409, 1/1/1456:1461 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JCS_013 | No text annotation | ||
| J3_3JCS_010 | No text annotation | ||
| J4_3JCS_002 | No text annotation |
Coloring options: