HL_3JCS_008
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAUUUGUC
- Length
- 10 nucleotides
- Bulged bases
- 3JCS|1|1|G|342, 3JCS|1|1|U|343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_008 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.1527
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3JCS|1|1|G|341
3JCS|1|1|G|342
3JCS|1|1|U|343
3JCS|1|1|A|344
3JCS|1|1|U|345
3JCS|1|1|U|346
3JCS|1|1|U|347
3JCS|1|1|G|348
3JCS|1|1|U|349
3JCS|1|1|C|350
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain i
- ribosomal protein L36e
- Chain n
- ribosomal protein L44e
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