HL_3JCS_013
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCCAG
- Length
- 5 nucleotides
- Bulged bases
- 3JCS|1|1|A|729
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_013 not in the Motif Atlas
- Geometric match to HL_4V9F_041
- Geometric discrepancy: 0.2572
- The information below is about HL_4V9F_041
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
3JCS|1|1|U|721
3JCS|1|1|C|727
3JCS|1|1|C|728
3JCS|1|1|A|729
3JCS|1|1|G|730
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- ribosomal protein L4
- Chain I
- ribosomal protein L13e
- Chain M
- ribosomal protein L15e
Coloring options: