HL_3JCS_016

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCCCUCCGUGG

Length

13 nucleotides

Bulged bases

3JCS|1|1|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|1|C|814
3JCS|1|1|G|815
3JCS|1|1|G|816
3JCS|1|1|C|817
3JCS|1|1|C|818
3JCS|1|1|C|819
3JCS|1|1|U|820
3JCS|1|1|C|821
3JCS|1|1|C|822
3JCS|1|1|G|823
3JCS|1|1|U|824
3JCS|1|1|G|825
3JCS|1|1|G|826

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain b

ribosomal protein L29e