HL_3JCS_017

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACCC

Length

8 nucleotides

Bulged bases

3JCS|1|1|A|898

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCS_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2855

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

3JCS|1|1|G|893
3JCS|1|1|G|894
3JCS|1|1|G|895
3JCS|1|1|A|898
3JCS|1|1|A|899
3JCS|1|1|C|900
3JCS|1|1|C|901
3JCS|1|1|C|902

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain Q

ribosomal protein L19e

Chain m

ribosomal protein L43e