HL_3JCS_026
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGGAAACUUGGAGAAAGUGUAGC
- Length
- 24 nucleotides
- Bulged bases
- 3JCS|1|1|A|1437, 3JCS|1|1|A|1440, 3JCS|1|1|U|1445, 3JCS|1|1|A|1446, 3JCS|1|1|G|1447
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_026 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3362
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JCS|1|1|G|1418
3JCS|1|1|C|1419
3JCS|1|1|G|1420
3JCS|1|1|G|1421
3JCS|1|1|A|1422
3JCS|1|1|A|1423
3JCS|1|1|A|1424
3JCS|1|1|C|1432
3JCS|1|1|U|1433
3JCS|1|1|U|1434
3JCS|1|1|G|1435
3JCS|1|1|G|1436
3JCS|1|1|A|1437
3JCS|1|1|G|1438
3JCS|1|1|A|1439
3JCS|1|1|A|1440
3JCS|1|1|A|1441
3JCS|1|1|G|1442
3JCS|1|1|U|1443
3JCS|1|1|G|1444
3JCS|1|1|U|1445
3JCS|1|1|A|1446
3JCS|1|1|G|1447
3JCS|1|1|C|1448
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain P
- ribosomal protein L18e
- Chain Z
- ribosomal protein L28e
- Chain f
- ribosomal protein L32e
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