HL_3JCS_029
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCACUC
- Length
- 7 nucleotides
- Bulged bases
- 3JCS|1|1|G|1614, 3JCS|1|1|U|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_029 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.2531
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3JCS|1|1|G|1613
3JCS|1|1|G|1614
3JCS|1|1|C|1615
3JCS|1|1|A|1616
3JCS|1|1|C|1617
3JCS|1|1|U|1618
3JCS|1|1|C|1619
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- ribosomal protein L19e
- Chain T
- ribosomal protein L22
- Chain l
- ribosomal protein L39e
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