HL_3JCS_032
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 3JCS|1|1|U|1759, 3JCS|1|1|U|1760
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_032 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.5132
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|G|1751
3JCS|1|1|G|1752
3JCS|1|1|U|1754
3JCS|1|1|U|1755
3JCS|1|1|A|1756
3JCS|1|1|U|1757
3JCS|1|1|A|1758
3JCS|1|1|U|1759
3JCS|1|1|U|1760
3JCS|1|1|C|1761
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain Q
- ribosomal protein L19e
- Chain V
- ribosomal protein L23
- Chain h
- ribosomal protein L34e
- Chain l
- ribosomal protein L39e
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