HL_3JCS_043

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGGUGUAGUAUAGGUGGAAGCGCAAGCGCAAAUGAAAUACCACCACUC

Length

49 nucleotides

Bulged bases

3JCS|1|2|U|699, 3JCS|1|2|U|704, 3JCS|1|2|U|706, 3JCS|1|2|A|730, 3JCS|1|2|C|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|2|G|695
3JCS|1|2|A|696
3JCS|1|2|G|697
3JCS|1|2|G|698
3JCS|1|2|U|699
3JCS|1|2|G|700
3JCS|1|2|U|701
3JCS|1|2|A|702
3JCS|1|2|G|703
3JCS|1|2|U|704
3JCS|1|2|A|705
3JCS|1|2|U|706
3JCS|1|2|A|707
3JCS|1|2|G|708
3JCS|1|2|G|709
3JCS|1|2|U|710
3JCS|1|2|G|711
3JCS|1|2|G|712
3JCS|1|2|A|713
3JCS|1|2|A|714
3JCS|1|2|G|715
3JCS|1|2|C|716
3JCS|1|2|G|717
3JCS|1|2|C|718
3JCS|1|2|A|719
3JCS|1|2|A|720
3JCS|1|2|G|721
3JCS|1|2|C|722
3JCS|1|2|G|723
3JCS|1|2|C|724
3JCS|1|2|A|725
3JCS|1|2|A|726
3JCS|1|2|A|727
3JCS|1|2|U|728
3JCS|1|2|G|729
3JCS|1|2|A|730
3JCS|1|2|A|731
3JCS|1|2|A|732
3JCS|1|2|U|733
3JCS|1|2|A|734
3JCS|1|2|C|735
3JCS|1|2|C|736
3JCS|1|2|A|737
3JCS|1|2|C|738
3JCS|1|2|C|739
3JCS|1|2|A|740
3JCS|1|2|C|741
3JCS|1|2|U|742
3JCS|1|2|C|743

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains