HL_3JCS_046

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGCCUCGUGCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00694.1

Basepair signature

cWW-L-cWW-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

3JCS|1|2|U|988
3JCS|1|2|G|989
3JCS|1|2|C|990
3JCS|1|2|C|991
3JCS|1|2|U|992
3JCS|1|2|C|993
3JCS|1|2|G|994
3JCS|1|2|U|995
3JCS|1|2|G|996
3JCS|1|2|C|997
3JCS|1|2|A|998

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain Y

ribosomal protein L27e