HL_3JCS_053

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAACAAAUC

Length

9 nucleotides

Bulged bases

3JCS|1|2|A|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41542.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

30

Unit IDs

3JCS|1|2|G|1215
3JCS|1|2|A|1216
3JCS|1|2|A|1217
3JCS|1|2|C|1218
3JCS|1|2|A|1219
3JCS|1|2|A|1220
3JCS|1|2|A|1221
3JCS|1|2|U|1222
3JCS|1|2|C|1223

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain L

ribosomal protein L15

Chain n

ribosomal protein L44e