HL_3JCS_054

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGUGGCGGCCAAGCGAUAGCGACGUCGCUUUUUG

Length

35 nucleotides

Bulged bases

3JCS|1|2|U|1299

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|2|U|1265
3JCS|1|2|U|1266
3JCS|1|2|G|1267
3JCS|1|2|U|1268
3JCS|1|2|G|1269
3JCS|1|2|G|1270
3JCS|1|2|C|1271
3JCS|1|2|G|1272
3JCS|1|2|G|1273
3JCS|1|2|C|1274
3JCS|1|2|C|1275
3JCS|1|2|A|1276
3JCS|1|2|A|1277
3JCS|1|2|G|1278
3JCS|1|2|C|1279
3JCS|1|2|G|1280
3JCS|1|2|A|1284
3JCS|1|2|U|1285
3JCS|1|2|A|1286
3JCS|1|2|G|1287
3JCS|1|2|C|1288
3JCS|1|2|G|1289
3JCS|1|2|A|1290
3JCS|1|2|C|1291
3JCS|1|2|G|1292
3JCS|1|2|U|1293
3JCS|1|2|C|1294
3JCS|1|2|G|1295
3JCS|1|2|C|1296
3JCS|1|2|U|1297
3JCS|1|2|U|1298
3JCS|1|2|U|1299
3JCS|1|2|U|1300
3JCS|1|2|U|1301
3JCS|1|2|G|1302

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

5S ribosomal RNA; 5S rRNA

Chain N

ribosomal protein L16