HL_3JCS_055

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCGCAGAAGAC

Length

12 nucleotides

Bulged bases

3JCS|1|2|G|1337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81880.1

Basepair signature

cWW-cWW-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3JCS|1|2|G|1334
3JCS|1|2|C|1335
3JCS|1|2|C|1336
3JCS|1|2|G|1337
3JCS|1|2|C|1338
3JCS|1|2|A|1339
3JCS|1|2|G|1340
3JCS|1|2|A|1341
3JCS|1|2|A|1342
3JCS|1|2|G|1343
3JCS|1|2|A|1344
3JCS|1|2|C|1345

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain E

ribosomal protein L6