HL_3JCS_060

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCGCGUUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42716.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3JCS|1|3|C|112
3JCS|1|3|U|113
3JCS|1|3|C|114
3JCS|1|3|G|115
3JCS|1|3|C|116
3JCS|1|3|G|117
3JCS|1|3|U|118
3JCS|1|3|U|119
3JCS|1|3|G|120

Current chains

Chain 3

26S gamma ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q

ribosomal protein L19e

Chain m

ribosomal protein L43e