HL_3JCS_066
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCCACCUACAAGACUGGAGCUUG
- Length
- 24 nucleotides
- Bulged bases
- 3JCS|1|6|G|11, 3JCS|1|6|C|12, 3JCS|1|6|A|23, 3JCS|1|6|C|24, 3JCS|1|6|U|31, 3JCS|1|6|U|32
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78306.1
- Basepair signature
- cWW-R-R-R-R-R-cWH-R-R-R-R-R-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
3JCS|1|6|C|10
3JCS|1|6|G|11
3JCS|1|6|C|12
3JCS|1|6|C|13
3JCS|1|6|A|14
3JCS|1|6|C|15
3JCS|1|6|C|16
3JCS|1|6|U|17
3JCS|1|6|A|18
3JCS|1|6|C|19
3JCS|1|6|A|20
3JCS|1|6|A|21
3JCS|1|6|G|22
3JCS|1|6|A|23
3JCS|1|6|C|24
3JCS|1|6|U|25
3JCS|1|6|G|26
3JCS|1|6|G|27
3JCS|1|6|A|28
3JCS|1|6|G|29
3JCS|1|6|C|30
3JCS|1|6|U|31
3JCS|1|6|U|32
3JCS|1|6|G|33
Current chains
- Chain 6
- 26S zeta ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- ribosomal protein L6
- Chain H
- ribosomal protein L13
- Chain K
- ribosomal protein L14e
- Chain g
- ribosomal protein L33e
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