HL_3JCT_029
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 3JCT|1|1|G|1349, 3JCT|1|1|A|1350, 3JCT|1|1|U|1351, 3JCT|1|1|G|1354, 3JCT|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCT_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.2371
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JCT|1|1|U|1347
3JCT|1|1|U|1348
3JCT|1|1|G|1349
3JCT|1|1|A|1350
3JCT|1|1|U|1351
3JCT|1|1|A|1352
3JCT|1|1|U|1353
3JCT|1|1|G|1354
3JCT|1|1|A|1355
3JCT|1|1|U|1356
3JCT|1|1|G|1357
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
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