HL_3JCT_043

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JCT|1|1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0801

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JCT|1|1|C|1923
3JCT|1|1|U|1924
3JCT|1|1|U|1925
3JCT|1|1|C|1926
3JCT|1|1|G|1927
3JCT|1|1|G|1928

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain p

60S ribosomal protein L43-A

Chain v

Ribosome biogenesis protein RPF2