HL_8C3A_043

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases (A, C, G, U)

1921U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29960.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

59

Unit IDs

8C3A|1|1|C|1919
8C3A|1|1|U|1920
8C3A|1|1|U|1921
8C3A|1|1|C|1922
8C3A|1|1|G|1923
8C3A|1|1|G|1924

Current chains

Chain 1

25S

Nearby chains

Chain AO

60S ribosomal protein L41

Chain AQ

60S ribosomal protein L43-A

Chain B

Small subunit ribosomal RNA; SSU rRNA