HL_3JCT_049

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AAAU

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_049 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3024

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3JCT|1|1|A|2279
3JCT|1|1|A|2280
3JCT|1|1|A|2313
3JCT|1|1|U|2314

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain p

60S ribosomal protein L43-A

Chain v

Ribosome biogenesis protein RPF2