HL_3JCT_050

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGGGGC

Length

6 nucleotides

Bulged bases

3JCT|1|1|G|2371

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_050 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1019

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3JCT|1|1|G|2369
3JCT|1|1|G|2370
3JCT|1|1|G|2371
3JCT|1|1|G|2376
3JCT|1|1|G|2377
3JCT|1|1|C|2378

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32

Chain s

Nuclear GTP-binding protein NUG1