HL_3JCT_051

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_051 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.3961

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCT|1|1|A|2441
3JCT|1|1|G|2442
3JCT|1|1|A|2443
3JCT|1|1|C|2444
3JCT|1|1|A|2445
3JCT|1|1|U|2501
3JCT|1|1|A|2502
3JCT|1|1|G|2503
3JCT|1|1|U|2504
3JCT|1|1|U|2505
3JCT|1|1|U|2506

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A