HL_3JCT_054

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

3JCT|1|1|A|2637, 3JCT|1|1|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_054 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1284

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

3JCT|1|1|U|2633
3JCT|1|1|U|2634
3JCT|1|1|A|2635
3JCT|1|1|A|2636
3JCT|1|1|A|2637
3JCT|1|1|C|2638
3JCT|1|1|G|2639
3JCT|1|1|A|2640
3JCT|1|1|U|2641
3JCT|1|1|A|2642
3JCT|1|1|A|2643
3JCT|1|1|C|2644
3JCT|1|1|G|2645

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain v

Ribosome biogenesis protein RPF2

Chain w

Regulator of ribosome biosynthesis