Motif HL_19870.9 Version HL_19870.9 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11	1-11	2-10	3-9	4-8
1	HL_4V9F_059	4V9F	0.9662	0	0	LSU rRNA	U	2389	U	2390	C	2391	C	2392	C	2393	A	2394	A	2395	C	2396	G	2397	A	2398	G	2399	cWW	tSH	tHH
2	HL_8C3A_056	8C3A	0.1267	2	1	LSU rRNA	U	2605	U	2606	A	2607	A	2608	C	2610	G	2611	A	2612	U	2613	A	2614	A	2615	G	2617	cWW	ntSH	tHH	tWW
3	HL_5TBW_055	5TBW	0.1203	2	1	LSU rRNA	U	2633	U	2634	A	2635	A	2636	C	2638	G	2639	A	2640	U	2641	A	2642	A	2643	G	2645	cWW	ntSH	tHH	tWW
4	HL_4V9F_056	4V9F	0.1195	2	0	LSU rRNA	C	2298	G	2299	A	2300	A	2301	A	2303	G	2304	A	2305	U	2306	A	2307	U	2308	G	2310	cWW	tSH	tHH	tWW
5	HL_4WF9_050	4WF9	0.0000	2	X	LSU rRNA	C	2291	U	2292	A	2293	A	2294	A	2296	G	2297	G	2298	U	2299	A	2300	A	2301	G	2303	cWW	ntSH	tHH	tWW
6	HL_5J7L_187	5J7L	0.0967	2	DA	LSU rRNA	C	2264	U	2265	A	2266	A	2267	G	2269	A	2270	G	2271	U	2272	A	2273	A	2274	G	2276	cWW	ntSH	tHH	tWW
7	HL_8VTW_053	8VTW	0.0841	2	1A	LSU rRNA	C	2264	U	2265	A	2266	A	2267	A	2269	G	2270	G	2271	U	2272	A	2273	A	2274	G	2276	cWW	ntSH	tHH	tWW
8	HL_7A0S_053	7A0S	0.1378	2	X	LSU rRNA	C	2243	C	2244	A	2245	A	2246	A	2248	U	2249	G	2250	U	2251	A	2252	A	2253	G	2255	cWW	ntSH	ntHH	tWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUAAACGAUAACG	2
CUAAAAGGUAACG	2
UUCCCAACGAG	1
CGAAAAGAUAUCG	1
CUAAAGAGUAACG	1
CCAAAAUGUAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAACGAUAAC	2
UAAAAGGUAAC	2
UCCCAACGA	1
GAAAAGAUAUC	1
UAAAGAGUAAC	1
CAAAAUGUAAC	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-tHH-cWW-tHS-F-F-tWW
Heat map statistics: Min 0.08 | Avg 0.30 | Max 0.98

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