HL_3JCT_055

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAACAGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_055 not in the Motif Atlas

Geometric match to HL_5J7L_188

Geometric discrepancy: 0.2786

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCT|1|1|G|2672
3JCT|1|1|A|2673
3JCT|1|1|A|2674
3JCT|1|1|C|2675
3JCT|1|1|A|2676
3JCT|1|1|G|2677
3JCT|1|1|A|2678
3JCT|1|1|A|2679
3JCT|1|1|A|2680
3JCT|1|1|U|2681
3JCT|1|1|C|2682

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L11-A