HL_3JCT_059
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 3JCT|1|1|U|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCT_059 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.426
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCT|1|1|C|2840
3JCT|1|1|G|2841
3JCT|1|1|U|2842
3JCT|1|1|U|2843
3JCT|1|1|C|2844
3JCT|1|1|A|2845
3JCT|1|1|U|2846
3JCT|1|1|A|2847
3JCT|1|1|G|2848
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain S
- 60S ribosomal protein L20-A
- Chain s
- Nuclear GTP-binding protein NUG1
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