HL_3JCT_060

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

3JCT|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_060 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1748

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3JCT|1|1|A|2897
3JCT|1|1|G|2898
3JCT|1|1|C|2899
3JCT|1|1|A|2900
3JCT|1|1|G|2901
3JCT|1|1|A|2902
3JCT|1|1|A|2903
3JCT|1|1|U|2904

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2