Motif HL_79150.1 Version HL_79150.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7YSE_002 | 7YSE | 0.5902 | 0 | Pseudoknot geometry | E | tRNA | U | 32 | U | 33 | G | 34 | C | 35 | C | 36 | A | 37 | A | 38 | cWW | |
| 2 | HL_4WF9_057 | 4WF9 | 0.1662 | 1 | X | LSU rRNA | U | 2555 | U | 2557 | A | 2558 | G | 2559 | U | 2560 | C | 2561 | G | 2562 | cWW | ||
| 3 | HL_5J7L_194 | 5J7L | 0.1419 | 1 | DA | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | ||
| 4 | HL_8VTW_060 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | ||
| 5 | HL_4V9F_063 | 4V9F | 0.1479 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | ||
| 6 | HL_7A0S_060 | 7A0S | 0.1343 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | ||
| 7 | HL_5TBW_062 | 5TBW | 0.1493 | 1 | 1 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | ||
| 8 | HL_8C3A_063 | 8C3A | 0.1665 | 1 | 1 | LSU rRNA | A | 2869 | C | 2871 | A | 2872 | G | 2873 | A | 2874 | A | 2875 | U | 2876 | cWW | ||
| 9 | HL_4LFB_002 | 4LFB | 0.3978 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ||
| 10 | HL_6JXM_002 | 6JXM | 0.4964 | 1 | B | tRNA | G | 41 | C | 42 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW | ||
| 11 | HL_3AKZ_011 | 3AKZ | 0.6671 | 2 | E | tRNAGln | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | ncSW | |
| 12 | HL_3AL0_002 | 3AL0 | 0.7694 | 2 | E | tRNAGln | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG | 2 |
| AGCAGAAU | 2 |
| ACUCUGGAU | 2 |
| UUGCCAA | 1 |
| UGUAGUCG | 1 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
| GUUUUAC | 1 |
| GCUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 3 |
| GAAGAA | 2 |
| CUCUGGA | 2 |
| UGCCA | 1 |
| GUAGUC | 1 |
| GAAGUA | 1 |
| UUUUA | 1 |
| CUAAAA | 1 |
- Annotations
-
- (11)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.44 | Max 0.88
Coloring options: