HL_3JCT_061

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

3JCT|1|1|G|2922, 3JCT|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCT_061 not in the Motif Atlas

Geometric match to HL_7RQB_009

Geometric discrepancy: 0.1896

The information below is about HL_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89098.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

3JCT|1|1|U|2920
3JCT|1|1|U|2921
3JCT|1|1|G|2922
3JCT|1|1|U|2923
3JCT|1|1|U|2924
3JCT|1|1|C|2925
3JCT|1|1|A|2926

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2