RNA 3D Hub //

Motif HL_89098.2 Version HL_89098.2 of this group appears in releases 3.85 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5TBW_0295TBW0.804381 LSU rRNAU1347A1355G1357cWW
2 HL_1GAX_0051GAX0.61086DTRNA(VAL)C930A936G938cWW
3 HL_2UWM_0022UWM0.00001DRNA (23-mer)G22U24C25cWW
4 HL_6U8D_0036U8D0.10761AJIIIabc RNA (68-MER)C232U234G235cWW
5 HL_6M0X_0026M0X0.14671BRNA (71-MER)U56C58A59cWW
6 HL_2PJP_0012PJP0.26701BSECIS RNAG22U24C25cWW
7 HL_8SP9_0028SP90.30432Mini UNCGCEnterovirus 5' cloverleaf cis-acting replication elementC67U69G71cWW
8 HL_4V9F_0044V9F0.91442Mini UNCG related0 LSU rRNAU125A128A129cWW
9 HL_7RQB_0097RQB0.308711A LSU rRNAC271|||JU271|||LG271|||MncWW
10 HL_6TQA_0036TQA0.52492Mini UNCGGRNA (21-mer)A9A11U13cWW
11 HL_6TQB_0016TQB0.51852Mini UNCGBRNA (19-mer)A10A12U14cWW
12 HL_4QI2_0034QI20.65292Mini UNCGGRNA (23-mer)C10G12G14cWW
13 HL_4QIL_0024QIL0.68642Mini UNCGCRNA (19-mer)C8G10G12cWW
14 HL_4Z31_0014Z310.68852Mini UNCGERNA (15-mer)C6G8G10cWW
15 HL_4ZLD_0014ZLD0.64742Mini UNCGBRNA (17-mer)C7G9G11cWW
16 HL_6AAX_0016AAX0.60403Mini UNCGBRNA (28-mer)U933A936A938cWW
17 HL_8J72_0018J720.87072Mini UNCG relatedClncRNA Trincr1C4A7G8cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUGUG4
GGUC2
AUAUU2
UUGAUAUGAUG1
CCUCACACG1
CGUG1
UUCA1
CAUUG1
UCUAA1
CUUG1
UGGAAA1
CAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UGU4
GU3
UAU2
UGAUAUGAU1
CUCACAC1
UC1
AUU1
CUA1
UU1
GGAA1
AAA1

Release history

Release3.853.86
Date2024-06-192024-07-17
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (8)
  • (7)
  • Mini UNCG related (2)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.05 | Avg 0.52 | Max 2.23
    Help

    Coloring options:

    HL_5TBW_029:HL_5TBW_029 = 0HL_5TBW_029:HL_1GAX_005 = 0.5986HL_5TBW_029:HL_2UWM_002 = 0.8043HL_5TBW_029:HL_6U8D_003 = 0.7107HL_5TBW_029:HL_6M0X_002 = 0.683HL_5TBW_029:HL_2PJP_001 = 0.6999HL_5TBW_029:HL_8SP9_002 = 0.7227HL_5TBW_029:HL_4V9F_004 = 2.1607HL_5TBW_029:HL_7RQB_009 = 0.8197HL_5TBW_029:HL_6TQA_003 = 0.9506HL_5TBW_029:HL_6TQB_001 = 0.905HL_5TBW_029:HL_4QI2_003 = 0.7461HL_5TBW_029:HL_4QIL_002 = 0.7624HL_5TBW_029:HL_4Z31_001 = 0.796HL_5TBW_029:HL_4ZLD_001 = 0.7571HL_5TBW_029:HL_6AAX_001 = 0.8116HL_5TBW_029:HL_8J72_001 = 2.2166HL_1GAX_005:HL_5TBW_029 = 0.5986HL_1GAX_005:HL_1GAX_005 = 0HL_1GAX_005:HL_2UWM_002 = 0.6108HL_1GAX_005:HL_6U8D_003 = 0.5849HL_1GAX_005:HL_6M0X_002 = 0.5605HL_1GAX_005:HL_2PJP_001 = 0.6801HL_1GAX_005:HL_8SP9_002 = 0.6861HL_1GAX_005:HL_4V9F_004 = 2.2287HL_1GAX_005:HL_7RQB_009 = 0.7675HL_1GAX_005:HL_6TQA_003 = 0.9579HL_1GAX_005:HL_6TQB_001 = 0.9185HL_1GAX_005:HL_4QI2_003 = 0.8452HL_1GAX_005:HL_4QIL_002 = 0.8921HL_1GAX_005:HL_4Z31_001 = 0.9184HL_1GAX_005:HL_4ZLD_001 = 0.8729HL_1GAX_005:HL_6AAX_001 = 0.9183HL_1GAX_005:HL_8J72_001 = 2.04HL_2UWM_002:HL_5TBW_029 = 0.8043HL_2UWM_002:HL_1GAX_005 = 0.6108HL_2UWM_002:HL_2UWM_002 = 0HL_2UWM_002:HL_6U8D_003 = 0.1076HL_2UWM_002:HL_6M0X_002 = 0.1467HL_2UWM_002:HL_2PJP_001 = 0.267HL_2UWM_002:HL_8SP9_002 = 0.3043HL_2UWM_002:HL_4V9F_004 = 0.9144HL_2UWM_002:HL_7RQB_009 = 0.3087HL_2UWM_002:HL_6TQA_003 = 0.5249HL_2UWM_002:HL_6TQB_001 = 0.5185HL_2UWM_002:HL_4QI2_003 = 0.6529HL_2UWM_002:HL_4QIL_002 = 0.6864HL_2UWM_002:HL_4Z31_001 = 0.6885HL_2UWM_002:HL_4ZLD_001 = 0.6474HL_2UWM_002:HL_6AAX_001 = 0.604HL_2UWM_002:HL_8J72_001 = 0.8707HL_6U8D_003:HL_5TBW_029 = 0.7107HL_6U8D_003:HL_1GAX_005 = 0.5849HL_6U8D_003:HL_2UWM_002 = 0.1076HL_6U8D_003:HL_6U8D_003 = 0HL_6U8D_003:HL_6M0X_002 = 0.1119HL_6U8D_003:HL_2PJP_001 = 0.1645HL_6U8D_003:HL_8SP9_002 = 0.3081HL_6U8D_003:HL_4V9F_004 = 0.3565HL_6U8D_003:HL_7RQB_009 = 0.3007HL_6U8D_003:HL_6TQA_003 = 0.5482HL_6U8D_003:HL_6TQB_001 = 0.5387HL_6U8D_003:HL_4QI2_003 = 0.6473HL_6U8D_003:HL_4QIL_002 = 0.6721HL_6U8D_003:HL_4Z31_001 = 0.678HL_6U8D_003:HL_4ZLD_001 = 0.6344HL_6U8D_003:HL_6AAX_001 = 0.5827HL_6U8D_003:HL_8J72_001 = 0.5961HL_6M0X_002:HL_5TBW_029 = 0.683HL_6M0X_002:HL_1GAX_005 = 0.5605HL_6M0X_002:HL_2UWM_002 = 0.1467HL_6M0X_002:HL_6U8D_003 = 0.1119HL_6M0X_002:HL_6M0X_002 = 0HL_6M0X_002:HL_2PJP_001 = 0.1474HL_6M0X_002:HL_8SP9_002 = 0.3185HL_6M0X_002:HL_4V9F_004 = 0.3261HL_6M0X_002:HL_7RQB_009 = 0.318HL_6M0X_002:HL_6TQA_003 = 0.5421HL_6M0X_002:HL_6TQB_001 = 0.5291HL_6M0X_002:HL_4QI2_003 = 0.6233HL_6M0X_002:HL_4QIL_002 = 0.6513HL_6M0X_002:HL_4Z31_001 = 0.6599HL_6M0X_002:HL_4ZLD_001 = 0.6189HL_6M0X_002:HL_6AAX_001 = 0.5811HL_6M0X_002:HL_8J72_001 = 0.5812HL_2PJP_001:HL_5TBW_029 = 0.6999HL_2PJP_001:HL_1GAX_005 = 0.6801HL_2PJP_001:HL_2UWM_002 = 0.267HL_2PJP_001:HL_6U8D_003 = 0.1645HL_2PJP_001:HL_6M0X_002 = 0.1474HL_2PJP_001:HL_2PJP_001 = 0HL_2PJP_001:HL_8SP9_002 = 0.2911HL_2PJP_001:HL_4V9F_004 = 0.823HL_2PJP_001:HL_7RQB_009 = 0.3361HL_2PJP_001:HL_6TQA_003 = 0.554HL_2PJP_001:HL_6TQB_001 = 0.5283HL_2PJP_001:HL_4QI2_003 = 0.6013HL_2PJP_001:HL_4QIL_002 = 0.6429HL_2PJP_001:HL_4Z31_001 = 0.654HL_2PJP_001:HL_4ZLD_001 = 0.6102HL_2PJP_001:HL_6AAX_001 = 0.615HL_2PJP_001:HL_8J72_001 = 0.778HL_8SP9_002:HL_5TBW_029 = 0.7227HL_8SP9_002:HL_1GAX_005 = 0.6861HL_8SP9_002:HL_2UWM_002 = 0.3043HL_8SP9_002:HL_6U8D_003 = 0.3081HL_8SP9_002:HL_6M0X_002 = 0.3185HL_8SP9_002:HL_2PJP_001 = 0.2911HL_8SP9_002:HL_8SP9_002 = 0HL_8SP9_002:HL_4V9F_004 = 0.2405HL_8SP9_002:HL_7RQB_009 = 0.2746HL_8SP9_002:HL_6TQA_003 = 0.3532HL_8SP9_002:HL_6TQB_001 = 0.3241HL_8SP9_002:HL_4QI2_003 = 0.4202HL_8SP9_002:HL_4QIL_002 = 0.447HL_8SP9_002:HL_4Z31_001 = 0.4451HL_8SP9_002:HL_4ZLD_001 = 0.4031HL_8SP9_002:HL_6AAX_001 = 0.3876HL_8SP9_002:HL_8J72_001 = 0.4716HL_4V9F_004:HL_5TBW_029 = 2.1607HL_4V9F_004:HL_1GAX_005 = 2.2287HL_4V9F_004:HL_2UWM_002 = 0.9144HL_4V9F_004:HL_6U8D_003 = 0.3565HL_4V9F_004:HL_6M0X_002 = 0.3261HL_4V9F_004:HL_2PJP_001 = 0.823HL_4V9F_004:HL_8SP9_002 = 0.2405HL_4V9F_004:HL_4V9F_004 = 0HL_4V9F_004:HL_7RQB_009 = 0.2671HL_4V9F_004:HL_6TQA_003 = 0.343HL_4V9F_004:HL_6TQB_001 = 0.3084HL_4V9F_004:HL_4QI2_003 = 0.3822HL_4V9F_004:HL_4QIL_002 = 0.3822HL_4V9F_004:HL_4Z31_001 = 0.3895HL_4V9F_004:HL_4ZLD_001 = 0.357HL_4V9F_004:HL_6AAX_001 = 0.3612HL_4V9F_004:HL_8J72_001 = 1.5397HL_7RQB_009:HL_5TBW_029 = 0.8197HL_7RQB_009:HL_1GAX_005 = 0.7675HL_7RQB_009:HL_2UWM_002 = 0.3087HL_7RQB_009:HL_6U8D_003 = 0.3007HL_7RQB_009:HL_6M0X_002 = 0.318HL_7RQB_009:HL_2PJP_001 = 0.3361HL_7RQB_009:HL_8SP9_002 = 0.2746HL_7RQB_009:HL_4V9F_004 = 0.2671HL_7RQB_009:HL_7RQB_009 = 0HL_7RQB_009:HL_6TQA_003 = 0.3514HL_7RQB_009:HL_6TQB_001 = 0.3444HL_7RQB_009:HL_4QI2_003 = 0.5123HL_7RQB_009:HL_4QIL_002 = 0.5275HL_7RQB_009:HL_4Z31_001 = 0.5258HL_7RQB_009:HL_4ZLD_001 = 0.495HL_7RQB_009:HL_6AAX_001 = 0.449HL_7RQB_009:HL_8J72_001 = 0.4789HL_6TQA_003:HL_5TBW_029 = 0.9506HL_6TQA_003:HL_1GAX_005 = 0.9579HL_6TQA_003:HL_2UWM_002 = 0.5249HL_6TQA_003:HL_6U8D_003 = 0.5482HL_6TQA_003:HL_6M0X_002 = 0.5421HL_6TQA_003:HL_2PJP_001 = 0.554HL_6TQA_003:HL_8SP9_002 = 0.3532HL_6TQA_003:HL_4V9F_004 = 0.343HL_6TQA_003:HL_7RQB_009 = 0.3514HL_6TQA_003:HL_6TQA_003 = 0HL_6TQA_003:HL_6TQB_001 = 0.0919HL_6TQA_003:HL_4QI2_003 = 0.3735HL_6TQA_003:HL_4QIL_002 = 0.3902HL_6TQA_003:HL_4Z31_001 = 0.37HL_6TQA_003:HL_4ZLD_001 = 0.3616HL_6TQA_003:HL_6AAX_001 = 0.3499HL_6TQA_003:HL_8J72_001 = 0.4321HL_6TQB_001:HL_5TBW_029 = 0.905HL_6TQB_001:HL_1GAX_005 = 0.9185HL_6TQB_001:HL_2UWM_002 = 0.5185HL_6TQB_001:HL_6U8D_003 = 0.5387HL_6TQB_001:HL_6M0X_002 = 0.5291HL_6TQB_001:HL_2PJP_001 = 0.5283HL_6TQB_001:HL_8SP9_002 = 0.3241HL_6TQB_001:HL_4V9F_004 = 0.3084HL_6TQB_001:HL_7RQB_009 = 0.3444HL_6TQB_001:HL_6TQA_003 = 0.0919HL_6TQB_001:HL_6TQB_001 = 0HL_6TQB_001:HL_4QI2_003 = 0.3124HL_6TQB_001:HL_4QIL_002 = 0.3342HL_6TQB_001:HL_4Z31_001 = 0.3154HL_6TQB_001:HL_4ZLD_001 = 0.308HL_6TQB_001:HL_6AAX_001 = 0.3407HL_6TQB_001:HL_8J72_001 = 0.4169HL_4QI2_003:HL_5TBW_029 = 0.7461HL_4QI2_003:HL_1GAX_005 = 0.8452HL_4QI2_003:HL_2UWM_002 = 0.6529HL_4QI2_003:HL_6U8D_003 = 0.6473HL_4QI2_003:HL_6M0X_002 = 0.6233HL_4QI2_003:HL_2PJP_001 = 0.6013HL_4QI2_003:HL_8SP9_002 = 0.4202HL_4QI2_003:HL_4V9F_004 = 0.3822HL_4QI2_003:HL_7RQB_009 = 0.5123HL_4QI2_003:HL_6TQA_003 = 0.3735HL_4QI2_003:HL_6TQB_001 = 0.3124HL_4QI2_003:HL_4QI2_003 = 0HL_4QI2_003:HL_4QIL_002 = 0.1174HL_4QI2_003:HL_4Z31_001 = 0.1246HL_4QI2_003:HL_4ZLD_001 = 0.1182HL_4QI2_003:HL_6AAX_001 = 0.3489HL_4QI2_003:HL_8J72_001 = 0.4706HL_4QIL_002:HL_5TBW_029 = 0.7624HL_4QIL_002:HL_1GAX_005 = 0.8921HL_4QIL_002:HL_2UWM_002 = 0.6864HL_4QIL_002:HL_6U8D_003 = 0.6721HL_4QIL_002:HL_6M0X_002 = 0.6513HL_4QIL_002:HL_2PJP_001 = 0.6429HL_4QIL_002:HL_8SP9_002 = 0.447HL_4QIL_002:HL_4V9F_004 = 0.3822HL_4QIL_002:HL_7RQB_009 = 0.5275HL_4QIL_002:HL_6TQA_003 = 0.3902HL_4QIL_002:HL_6TQB_001 = 0.3342HL_4QIL_002:HL_4QI2_003 = 0.1174HL_4QIL_002:HL_4QIL_002 = 0HL_4QIL_002:HL_4Z31_001 = 0.0534HL_4QIL_002:HL_4ZLD_001 = 0.0689HL_4QIL_002:HL_6AAX_001 = 0.2969HL_4QIL_002:HL_8J72_001 = 0.4169HL_4Z31_001:HL_5TBW_029 = 0.796HL_4Z31_001:HL_1GAX_005 = 0.9184HL_4Z31_001:HL_2UWM_002 = 0.6885HL_4Z31_001:HL_6U8D_003 = 0.678HL_4Z31_001:HL_6M0X_002 = 0.6599HL_4Z31_001:HL_2PJP_001 = 0.654HL_4Z31_001:HL_8SP9_002 = 0.4451HL_4Z31_001:HL_4V9F_004 = 0.3895HL_4Z31_001:HL_7RQB_009 = 0.5258HL_4Z31_001:HL_6TQA_003 = 0.37HL_4Z31_001:HL_6TQB_001 = 0.3154HL_4Z31_001:HL_4QI2_003 = 0.1246HL_4Z31_001:HL_4QIL_002 = 0.0534HL_4Z31_001:HL_4Z31_001 = 0HL_4Z31_001:HL_4ZLD_001 = 0.0588HL_4Z31_001:HL_6AAX_001 = 0.2755HL_4Z31_001:HL_8J72_001 = 0.4077HL_4ZLD_001:HL_5TBW_029 = 0.7571HL_4ZLD_001:HL_1GAX_005 = 0.8729HL_4ZLD_001:HL_2UWM_002 = 0.6474HL_4ZLD_001:HL_6U8D_003 = 0.6344HL_4ZLD_001:HL_6M0X_002 = 0.6189HL_4ZLD_001:HL_2PJP_001 = 0.6102HL_4ZLD_001:HL_8SP9_002 = 0.4031HL_4ZLD_001:HL_4V9F_004 = 0.357HL_4ZLD_001:HL_7RQB_009 = 0.495HL_4ZLD_001:HL_6TQA_003 = 0.3616HL_4ZLD_001:HL_6TQB_001 = 0.308HL_4ZLD_001:HL_4QI2_003 = 0.1182HL_4ZLD_001:HL_4QIL_002 = 0.0689HL_4ZLD_001:HL_4Z31_001 = 0.0588HL_4ZLD_001:HL_4ZLD_001 = 0HL_4ZLD_001:HL_6AAX_001 = 0.2539HL_4ZLD_001:HL_8J72_001 = 0.3981HL_6AAX_001:HL_5TBW_029 = 0.8116HL_6AAX_001:HL_1GAX_005 = 0.9183HL_6AAX_001:HL_2UWM_002 = 0.604HL_6AAX_001:HL_6U8D_003 = 0.5827HL_6AAX_001:HL_6M0X_002 = 0.5811HL_6AAX_001:HL_2PJP_001 = 0.615HL_6AAX_001:HL_8SP9_002 = 0.3876HL_6AAX_001:HL_4V9F_004 = 0.3612HL_6AAX_001:HL_7RQB_009 = 0.449HL_6AAX_001:HL_6TQA_003 = 0.3499HL_6AAX_001:HL_6TQB_001 = 0.3407HL_6AAX_001:HL_4QI2_003 = 0.3489HL_6AAX_001:HL_4QIL_002 = 0.2969HL_6AAX_001:HL_4Z31_001 = 0.2755HL_6AAX_001:HL_4ZLD_001 = 0.2539HL_6AAX_001:HL_6AAX_001 = 0HL_6AAX_001:HL_8J72_001 = 0.3522HL_8J72_001:HL_5TBW_029 = 2.2166HL_8J72_001:HL_1GAX_005 = 2.04HL_8J72_001:HL_2UWM_002 = 0.8707HL_8J72_001:HL_6U8D_003 = 0.5961HL_8J72_001:HL_6M0X_002 = 0.5812HL_8J72_001:HL_2PJP_001 = 0.778HL_8J72_001:HL_8SP9_002 = 0.4716HL_8J72_001:HL_4V9F_004 = 1.5397HL_8J72_001:HL_7RQB_009 = 0.4789HL_8J72_001:HL_6TQA_003 = 0.4321HL_8J72_001:HL_6TQB_001 = 0.4169HL_8J72_001:HL_4QI2_003 = 0.4706HL_8J72_001:HL_4QIL_002 = 0.4169HL_8J72_001:HL_4Z31_001 = 0.4077HL_8J72_001:HL_4ZLD_001 = 0.3981HL_8J72_001:HL_6AAX_001 = 0.3522HL_8J72_001:HL_8J72_001 = 0HL_5TBW_029HL_1GAX_005HL_2UWM_002HL_6U8D_003HL_6M0X_002HL_2PJP_001HL_8SP9_002HL_4V9F_004HL_7RQB_009HL_6TQA_003HL_6TQB_001HL_4QI2_003HL_4QIL_002HL_4Z31_001HL_4ZLD_001HL_6AAX_001HL_8J72_001Discrepancy0.000.501.001.502.00
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