Motif HL_89098.2 Version HL_89098.2 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_029 | 5TBW | 0.8043 | 8 | 1 | LSU rRNA | U | 1347 | A | 1355 | G | 1357 | cWW | |
| 2 | HL_1GAX_005 | 1GAX | 0.6108 | 6 | D | TRNA(VAL) | C | 930 | A | 936 | G | 938 | cWW | |
| 3 | HL_2UWM_002 | 2UWM | 0.0000 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW | |
| 4 | HL_6U8D_003 | 6U8D | 0.1076 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW | |
| 5 | HL_6M0X_002 | 6M0X | 0.1467 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW | |
| 6 | HL_2PJP_001 | 2PJP | 0.2670 | 1 | B | SECIS RNA | G | 22 | U | 24 | C | 25 | cWW | |
| 7 | HL_8SP9_002 | 8SP9 | 0.3043 | 2 | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 67 | U | 69 | G | 71 | cWW | |
| 8 | HL_4V9F_004 | 4V9F | 0.9144 | 2 | 0 | LSU rRNA | U | 125 | A | 128 | A | 129 | cWW | |
| 9 | HL_7RQB_009 | 7RQB | 0.3087 | 1 | 1A | LSU rRNA | C | 271|||J | U | 271|||L | G | 271|||M | ncWW | |
| 10 | HL_6TQA_003 | 6TQA | 0.5249 | 2 | G | RNA (21-mer) | A | 9 | A | 11 | U | 13 | cWW | |
| 11 | HL_6TQB_001 | 6TQB | 0.5185 | 2 | B | RNA (19-mer) | A | 10 | A | 12 | U | 14 | cWW | |
| 12 | HL_4QI2_003 | 4QI2 | 0.6529 | 2 | G | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
| 13 | HL_4QIL_002 | 4QIL | 0.6864 | 2 | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW | |
| 14 | HL_4Z31_001 | 4Z31 | 0.6885 | 2 | E | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW | |
| 15 | HL_4ZLD_001 | 4ZLD | 0.6474 | 2 | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW | |
| 16 | HL_6AAX_001 | 6AAX | 0.6040 | 3 | B | RNA (28-mer) | U | 933 | A | 936 | A | 938 | cWW | |
| 17 | HL_8J72_001 | 8J72 | 0.8707 | 2 | C | lncRNA Trincr1 | C | 4 | A | 7 | G | 8 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| GGUC | 2 |
| AUAUU | 2 |
| UUGAUAUGAUG | 1 |
| CCUCACACG | 1 |
| CGUG | 1 |
| UUCA | 1 |
| CAUUG | 1 |
| UCUAA | 1 |
| CUUG | 1 |
| UGGAAA | 1 |
| CAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| GU | 3 |
| UAU | 2 |
| UGAUAUGAU | 1 |
| CUCACAC | 1 |
| UC | 1 |
| AUU | 1 |
| CUA | 1 |
| UU | 1 |
| GGAA | 1 |
| AAA | 1 |
Coloring options: