HL_3JCT_070
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 3JCT|1|2|U|82, 3JCT|1|2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCT_070 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.5031
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3JCT|1|2|U|69
3JCT|1|2|G|70
3JCT|1|2|A|71
3JCT|1|2|A|72
3JCT|1|2|U|73
3JCT|1|2|U|74
3JCT|1|2|G|75
3JCT|1|2|C|76
3JCT|1|2|A|77
3JCT|1|2|G|78
3JCT|1|2|A|79
3JCT|1|2|A|80
3JCT|1|2|U|81
3JCT|1|2|U|82
3JCT|1|2|C|83
3JCT|1|2|C|84
3JCT|1|2|G|85
3JCT|1|2|U|86
3JCT|1|2|G|87
3JCT|1|2|A|88
3JCT|1|2|A|89
Current chains
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Probable metalloprotease ARX1
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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