Motif HL_08513.2 Version HL_08513.2 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 3-14 | 3-17 | 4-11 | 5-10 | 14-15 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P4V_073 | 8P4V | 0.1194 | 2 | 4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 80 | U | 81 | U | 82 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | cWW | ntSH | tSs | tHS | ncwW | ncWW | |
| 2 | HL_5TBW_231 | 5TBW | 0.0000 | 2 | 4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 80 | U | 81 | U | 82 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | cWW | ntSH | tSs | tHS | ncWW | ncSH | |
| 3 | HL_8C3A_230 | 8C3A | 0.5961 | 2 | 4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | U | 80 | A | 81 | U | 82 | U | 83 | G | 85 | G | 87 | A | 88 | A | 89 | ncWW | tSH | tSs | tHS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUUGCAGAAUUCCGUGAA | 2 |
| UGAAUUGCAGAUAUUCGUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUUGCAGAAUUCCGUGA | 2 |
| GAAUUGCAGAUAUUCGUGA | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.30 | Max 0.64
Coloring options: