HL_3JD5_006
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CUGUAAAAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JD5_006 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.3508
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3JD5|1|A|C|335
3JD5|1|A|U|336
3JD5|1|A|G|337
3JD5|1|A|U|338
3JD5|1|A|A|339
3JD5|1|A|A|340
3JD5|1|A|A|341
3JD5|1|A|A|342
3JD5|1|A|A|343
3JD5|1|A|G|344
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain G
- 28S ribosomal protein S7, mitochondrial
- Chain K
- 28S ribosomal protein S11, mitochondrial
- Chain U
- 28S ribosomal protein S21, mitochondrial
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