HL_3JD5_007

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

3JD5|1|A|U|427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JD5_007 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.3542

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

3JD5|1|A|G|420
3JD5|1|A|A|421
3JD5|1|A|U|422
3JD5|1|A|U|423
3JD5|1|A|A|424
3JD5|1|A|G|425
3JD5|1|A|A|426
3JD5|1|A|U|427
3JD5|1|A|A|428
3JD5|1|A|C|429
3JD5|1|A|C|430

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain K

28S ribosomal protein S11, mitochondrial