HL_3JD5_011
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CCUAAAAAGG
- Length
- 10 nucleotides
- Bulged bases
- 3JD5|1|A|A|632
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JD5_011 not in the Motif Atlas
- Geometric match to HL_4V90_032
- Geometric discrepancy: 0.3996
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
3JD5|1|A|C|629
3JD5|1|A|C|630
3JD5|1|A|U|631
3JD5|1|A|A|632
3JD5|1|A|A|633
3JD5|1|A|A|634
3JD5|1|A|A|635
3JD5|1|A|A|636
3JD5|1|A|G|637
3JD5|1|A|G|638
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain F
- 28S ribosomal protein S6, mitochondrial
- Chain b
- 28S ribosomal protein S23, mitochondrial
Coloring options: