HL_3JD5_012

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UACACCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JD5_012 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2127

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3JD5|1|A|U|723
3JD5|1|A|A|724
3JD5|1|A|C|725
3JD5|1|A|A|726
3JD5|1|A|C|727
3JD5|1|A|C|728
3JD5|1|A|A|729
3JD5|1|A|A|730

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain G

28S ribosomal protein S7, mitochondrial

Chain I

28S ribosomal protein S9, mitochondrial

Chain g

28S ribosomal protein S29, mitochondrial