HL_3JYV_006

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

3JYV|1|A|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_006 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.2355

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JYV|1|A|G|330
3JYV|1|A|A|331
3JYV|1|A|U|332
3JYV|1|A|A|333
3JYV|1|A|G|334
3JYV|1|A|U|335
3JYV|1|A|G|336
3JYV|1|A|G|337
3JYV|1|A|C|338

Current chains

Chain A

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S11