HL_3JYV_019

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_019 not in the Motif Atlas

Geometric match to HL_5J7L_015

Geometric discrepancy: 0.1493

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JYV|1|A|A|899
3JYV|1|A|G|900
3JYV|1|A|G|901
3JYV|1|A|U|902
3JYV|1|A|G|903
3JYV|1|A|A|904
3JYV|1|A|A|905
3JYV|1|A|A|906
3JYV|1|A|U|907
3JYV|1|A|U|908

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S14(A)