HL_3JYV_026

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

3JYV|1|A|G|1241, 3JYV|1|A|C|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_026 not in the Motif Atlas

Geometric match to HL_8CRE_034

Geometric discrepancy: 0.3424

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JYV|1|A|A|1234
3JYV|1|A|U|1235
3JYV|1|A|U|1236
3JYV|1|A|G|1237
3JYV|1|A|A|1238
3JYV|1|A|G|1239
3JYV|1|A|A|1240
3JYV|1|A|G|1241
3JYV|1|A|C|1242
3JYV|1|A|U|1243

Current chains

Chain A

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S29(A)

Chain S

40S ribosomal protein S15