HL_3JYV_028

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

3JYV|1|A|U|1311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JYV_028 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1295

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

3JYV|1|A|C|1306
3JYV|1|A|U|1307
3JYV|1|A|U|1308
3JYV|1|A|A|1309
3JYV|1|A|A|1310
3JYV|1|A|U|1311
3JYV|1|A|U|1312
3JYV|1|A|G|1313

Current chains

Chain A

18S rRNA

Nearby chains